interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF HUMAN TDP-43 RRM1 DOMAIN IN COMPLEX WITH AN UNMODIFIED SINGLE-STRANDED DNA
(TAR DNA-binding protein 43)
referenceDoudeva et al. 'Sci 6 21581 2016
sourceHomo sapiens
experimentX-ray (resolution=2.65, R-factor=0.245)
structural superfamilyRNA-binding domain, RBD;
sequence familyRNA recognition motif aka RRM, RBD, or;
redundant complexes4y00_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDILWQKLKFFRPNS

Estimated binding specificities ?

contactlogo
# IC=8.514 IC/col=1.064 n_of_columns=8 specificity:   
A |   0   0  57   0   0   0   0  13
C |   0   0  13   0  96   0   0  13
G |   0  96  13  96   0  96   0  13
T |  96   0  13   0   0   0  96  57
scan!

Dendrogram of similar interfaces ?

matrix format
  
  DGICLGWG--QGKT--LT--KGFGFGRG----PCNC   L                     +----4y0f_A    
                                             +-----------------2 
  TAFCSG----LAKATG--TGSGVGFA--RAECACKC   L   !                 ! +--5tkz_B    
                                           --3                 +-1 
  TAFCAG----RC------------FA--RAEGACRC   L   !                   +--6dg0_A    
                                             ! 
  --------RA--------------------------   L   +----------------------6mrj_D    
                                           

home
updated Tue Dec 19 09:45:40 2023