interface graph thumbnail
legend  pdf

structure nameTHE COMPLEX OF SPO0J AND PARS DNA IN CHROMOSOMAL PARTITION SYSTEM
(PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB)
referenceHsiao et al. 'Proc. 112 6613 2015
sourceHELICOBACTER PYLORI
experimentX-ray (resolution=3.10, R-factor=0.254)
structural superfamilyKorB DNA-binding domain-like;ParB/Sulfiredoxin;
sequence familyParBlike nuclease domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureESRAANRKVRE

Estimated binding specificities ?

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# IC=8.316 IC/col=1.040 n_of_columns=8 specificity:   
A |  27   0   0  13  96  96   0  96
C |  13   0   0  13   0   0  96   0
G |  41   0  96  54   0   0   0   0
T |  15  96   0  16   0   0   0   0
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Tue Dec 19 09:30:51 2023