structure name | CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA (HTH-type transcriptional repressor YvoA) |
reference | Fillenberg et al. 'Nucleic 43 1283 2015 |
source | Bacillus subtilis subsp. subtilis str. 168 |
experiment | X-ray (resolution=1.91, R-factor=0.181) |
structural superfamily | "Winged helix" DNA-binding domain; |
sequence family | Bacterial regulatory proteins, gntR family; |
multimeric complexes | 4u0y_ABCD |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RSRMTR |
Estimated binding specificities ?
contact |
A | 2 59 7 81 0 0 63 C | 1 11 25 0 96 96 11 G | 0 2 42 13 0 0 11 T | 93 24 22 2 0 0 11scan! |
Dendrogram of similar interfaces ?
matrix format----------------EGRGSARGMCTTRT------------------ L +-------------------4wwc_B +----4 ----------------ETNTSCRGHC--RT--------QA-------- L +--5 +-------------------5d4s_B ! ! ------------------------------RCYG--KT---------- ! +------------------------2acj_B ! ----------------RA--ST--ECTTRAKA------HT-------- L +-7 +-----------------7oz3_B ! ! +--------3 ------------------------TTHT--KG------RC-------- L ! ! ! +-----------------7b0c_A ! +-6 --------------------------------YGRG------------ ! ! +4wcg_A +-8 ! +--------------1 --------------------STRGQTQAST------HG------KT-- L ! ! +----------2 +7t8k_B ! ! ! --------------------TT--PTTCSTNT---------------- L +-9 ! +---------------4lln_I ! ! ! --------------------HT--STATSTRG---------------- L ! ! +-----------------------------5lej_A +-10 ! --------LAHAKARA------------------------------IA ! ! +-----------------------------6dta_A +-11 ! ------------------------KGTA--TA--RG------------ L ! ! +-----------------------------1xsd_A +-12 ! --------------------ST--PTTCSTQC--RA------------ L ! ! +-----------------------------1ddn_B +-13 ! IARTQTNA---------------------------------------- L ! ! +-----------------------------6d5f_d +-14 ! ----------------------------------------NG------ ! ! +-----------------------------7k63_U -15 ! ----------------------AT----NT------------------ L ! +-----------------------------7c7l_A ! --------------------NTHG--RTYTPT----------RT---- L +-----------------------------6qil_A |
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updated Tue Dec 19 09:29:59 2023