| structure name | CRYSTAL STRUCTURE OF THE COMPLEX FORMED BY REGION OF E. COLI SIGMAE BOUND TO ITS -10 ELEMENT NON TEMPLATE STRAND (RNA polymerase sigma factor) |
| reference | Vorholt et al. Nat.Struct.Mol.Biol. 21 269 2014 |
| source | Escherichia coli |
| experiment | X-ray (resolution=1.20, R-factor=0.147) |
| structural superfamily | Sigma2 domain of RNA polymerase sigma factors; |
| sequence family | Sigma70 region 2; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KAFRDSYTWYRINN |
Estimated binding specificities ?
| contact |  |
A | 14 0 0 0 24 60 96 C | 14 0 0 96 24 12 0 G | 14 96 0 0 24 12 0 T | 54 0 96 0 24 12 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SIGMAE | ||
| GTCTAA | PubMed | 4lup_A(6.24e-06) |
| TCTAA | PubMed | 4lup_A(1.00e-03) |
Dendrogram of similar interfaces ?
matrix format--------SC------PTSC--KTATSCFCRC--DC------TAWTYARTIT--NT--KCNC--VTRA-- L +-----------------------------6jbq_F +-1 IA--LAKARAFT--YTTT--WT------FA--KAYA----HA--YATAQAAT--NT--VA--IT----VT L +-2 +-----------------------------7d7c_F ! ! --DGQG----LGMART--PG--KT----FTRT----TTNTKGAGWTYGRTITTGNTYAICNCYA--RG-- --3 +-----------------------------5zx2_F ! --DG------LG------PG--KT----FTRT----TTNT--AGWTYGRTITTGNT-------------- +-----------------------------6jcy_F |
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updated Tue Dec 19 09:06:53 2023