interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF AFT2 IN COMPLEX WITH DNA
(Iron-regulated transcriptional activator AFT2)
referenceSchuermann et al. Proc.Natl.Acad.Sci.USA 111 4043 2014
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=2.20, R-factor=0.192)
sequence familyTranscription factor AFT; MuDR family transposase;
multimeric complexes4lmg_AD 4lmg_BC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRSDK

Estimated binding specificities ?

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# IC=3.569 IC/col=0.892 n_of_columns=4 specificity:   
A |  38   0   0  19
C |  19  96  96  77
G |  20   0   0   0
T |  19   0   0   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: AFT2
TGCACCCPubMed4lmg_C(1.24e-03)
CACCCPubMed4lmg_C(1.72e-04)

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updated Tue Dec 19 09:05:40 2023