interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A LSR-DNA COMPLEX
(Putative integrase Bacteriophage A118)
referenceVan Duyne et al. 'Nucleic 41 8341 2013
sourceListeria innocua
experimentX-ray (resolution=3.20, R-factor=0.239)
sequence familyRecombinase;
reference complex6dnw_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureMKRYNNKKDTSYYYK

Estimated binding specificities ?

readout + contactlogo
# IC=17.016 IC/col=0.681 n_of_columns=25 specificity:   
A |   0   0   0  96   3  24  24  24  11   3   0  24  24   0   0  24  24  24   4   5   6  24   9   0   0
C |   0   0   0   0   3  24  24  24  67   3  96  24  24   0   0  24  24  24  89  12  73  24   6   0   0
G |   0   0   0   0  86  24  24  24   9   4   0  24  24   0   0  24  24  24   0   3   8  24  12   0  96
T |  96  96  96   0   4  24  24  24   9  86   0  24  24  96  96  24  24  24   3  76   9  24  69  96   0
scan!

home
updated Mon Dec 18 10:47:26 2023