4izz_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FISCHERELLA TRANSCRIPTION FACTOR HETR COMPLEXED WITH 21MER DNA TARGET (TRANSCRIPTION FACTOR HETR)
reference	Midwest Center for Structural Genomics (MCSG)
source	FISCHERELLA THERMALIS
experiment	X-ray (resolution=2.50, R-factor=0.185)
sequence family	Peptidase family S48;
redundant complexes	4j00 4j01
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4izz_A interface=58,67,69, vdlikrlgpsamdqimlylafsamrtsghrhgafldaaataakcaiymtyleqgqnlRmtghlhhlEpKrvkaiveevrqaltegkllkmlgsqepryliqfpyvwmekypwrpgrsripgtsltseekrqieqklpsnlpdahlitsfeflelieflhkrsqedlpkehqmplsealaehikrrllysgtvtridspwgmpfyaltrpfyapaddqertyimvedtarffrmmrdwaekrpntmrvleeldilpekmqqakdeldeiirawadkyhqddgvpvvlqmvfgkke
interface signature	REK

Estimated binding specificities ?

readout + contact

# IC=5.807 IC/col=0.830 n_of_columns=7

specificity:

A |   0   0  57  24   0   0  13
C |   0   0  13  24   0   0  13
G |   0  96  13  24  96  96  54
T |  96   0  13  24   0   0  16

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RGEC--KG------------------   L         +----------------------4yrv_B    
                                     +---1 
  ------------NASTRGHTNTSTLT   L   +-2   +----------------------7fj2_B    
                                   ! ! 
  ------------NASTRTHT--ST--   L --3 +--------------------------3co7_C    
                                   ! 
  --SGRGPTSGRG--------------   L   +---------------------------7bhy_A

home
updated Mon Dec 18 10:32:50 2023