4ht4_A : 3D-footprint complex

structure name	MOLECULAR BASIS OF VANCOMYCIN RESISTANCE TRANSFER IN STAPHYLOCOCCUS AUREUS (Nicking enzyme)
reference	Proc.Natl.Acad.Sci.USA 110 2804 2013
source	Staphylococcus aureus
experiment	X-ray (resolution=2.91, R-factor=0.232)
sequence family	MobA/MobL family;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ht4_A interface=77,150,153,155, amyhfqnkfvskangqsataksafnsasrikdfkenefkdysnkqcdyseillpnnaddkfkdreylwnkvhdvenRknsqvareiiiglpnefdpnsnielakefaeslsnegmivdlnihkineenphahllctlrgldknnefepkRkgNdYirdwntkekhnewrkrwenvqnkhlekngfsvrvsadsy
interface signature	RRNY

Estimated binding specificities ?

readout + contact

# IC=3.569 IC/col=0.892 n_of_columns=4

specificity:

A |  19   0   0  38
C |   0  96   0  19
G |  77   0  96  19
T |   0   0   0  20

scan!

Dendrogram of similar interfaces ?

matrix format

  
  HTFAQGNTFARTQART------NGEG--------------EGNGPG--RGNCYA------NAKT--HA----RA----------   L                  +-----------4ht4_A    
                                                                                                       +----1 
  --LTSTHAVT--RG----TTST--------------------QT--RA------KGNTDG--VTKG--RT--------------   L   +---------2    +-----------1omh_A    
                                                                                             !         ! 
  VT--RGMTKARA----WAIG------------------------------------------------RT--LTQA--------   L --3         +----------------4lvi_A    
                                                                                             ! 
  --------------------------VCKCVCRCICECNC----RC------------------NA--FAKC----KCDCSASA   L   +--------------------------3vke_A

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updated Tue Dec 19 08:57:13 2023