interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE TAL EFFECTOR DHAX3 BOUND TO METHYLATED DSDNA
(HAX3)
referenceYan et al. 'To ? ? ?
sourceXANTHOMONAS CAMPESTRIS PV. ARMORACIAE
experimentX-ray (resolution=1.85, R-factor=0.200)
structural superfamilyThiolase-like;
sequence familyXanthomonas avirulence protein, Avr/PthA;
redundant complexes4ot0_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRDDDSDD

Estimated binding specificities ?

readout + contactlogo
# IC=7.928 IC/col=0.721 n_of_columns=11 specificity:   
A |   0   0   0   1  24  17  52  24   0  24   0
C |  96  96  96  17  24   8  17  24  96  24  96
G |   0   0   0   0  24  19   8  24   0  24   0
T |   0   0   0  78  24  52  19  24   0  24   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RGDCDCDC------SA--DCDC----   L        +4gjr_B    
                                      +-1 
  RTDA--IA--ITIAIADCDCITIADC   L   +--2 +2ypf_A    
                                   !  ! 
  IANGDCIAIATARGSADCNG--SA--   L --3  +--4cja_A    
                                   ! 
  DCIA--DC----DCDCIC--IADC--   L   +-----3ugm_A    
                                 

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updated Tue Dec 19 08:52:08 2023