| structure name | CCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA (HAPE) | |
| reference | Hortschansky et al. Structure 20 1757 2012 | |
| source | ASPERGILLUS NIDULANS | |
| experiment | X-ray (resolution=1.80, R-factor=0.158) | |
| structural superfamily | Histone-fold; | |
| sequence family | Histonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4; | |
| multimeric complexes | 4g92_ABC 6y35_ABC 6y36_ABC 6y37_ABC 6y39_BCEFHI 7aw7_ABCDE 7aw9_ABCDE | |
| redundant complexes | 6y39_C 6y35 6y36 6y37 7aw7 7aw9 | |
| links to other resources | NAKB  PDIdb DNAproDB | |
| site | source | matches (E-value) |
|---|---|---|
| term: CCAAT | ||
| CCAAT | PubMed | 4g92_ABC(1.40e-05), 6y35_ABC(3.75e-04), 6y36_ABC(1.26e-07), ... (total=4) |
| ATTGG | PubMed | 4g92_ABC(1.40e-05), 6y35_ABC(3.75e-04), 6y36_ABC(1.26e-07), ... (total=4) |
| CCAAC | PubMed | 4g92_ABC(7.23e-03), 6y36_ABC(3.65e-04), 6y37_ABC(7.13e-03) |
| CTGATTGGC | PubMed | 4g92_ABC(7.98e-07), 6y35_ABC(1.10e-04), 6y36_ABC(1.25e-08), ... (total=4) |
| GCCAA | PubMed | 4g92_ABC(7.23e-03), 6y36_ABC(3.65e-04), 6y37_ABC(7.13e-03) |
| TGCCAATCA | PubMed | 4g92_ABC(7.98e-07), 6y35_ABC(1.10e-04), 6y36_ABC(1.25e-08), ... (total=4) |
| CCAATCGCAT | PubMed | 4g92_ABC(9.64e-04), 6y35_ABC(1.84e-04), 6y36_ABC(2.66e-08), ... (total=4) |
| CAATT | PubMed | 4g92_ABC(7.13e-03), 6y35_ABC(1.40e-04), 6y36_ABC(3.68e-04), ... (total=4) |
| GCCAAT | PubMed | 4g92_ABC(1.63e-04), 6y35_ABC(1.18e-03), 6y36_ABC(9.19e-07), ... (total=4) |
| GCAATGA | PubMed | 4g92_ABC(9.50e-03), 6y35_ABC(3.53e-03), 6y36_ABC(3.47e-03), ... (total=4) |
Dendrogram of similar interfaces ?
matrix formatRG---- +-----------------------------3x1t_H ! ----RT ! +---1u35_G ! +------------2 --LTRC ! +-5 +---3kwq_E +-8 ! ! --LC-- ! ! +-------6 +----------------8bvw_e ! ! ! ! ----RT ! ! ! ! +----7lyb_G ! ! ! +-----------3 ----RT ! +----7 +----8cww_A +-9 ! --LTRC ! ! ! +--------------6jm9_A ! ! +---------4 ----RG ! ! ! +7uv9_E +-10 ! +--------------1 ----RT ! ! ! +8g57_E ! ! ! ----RA +-11 ! +-----------------------------1kx5_G ! ! ! ----RG ! ! +-----------------------------7yqk_E -12 ! --LCRT ! +-----------------------------8byq_e ! ----RT +-----------------------------7zs9_e |
home
updated Tue Dec 19 08:50:01 2023