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3D-footprint cannot reliably estimate the specificity of proteins that bind to single-stranded DNA molecules, as these often accumulate many base contacts which distort the calculations.

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updated Tue Dec 19 08:48:53 2023

structure name	STRUCTURAL CHARACTERIZATION OF H-1 PARVOVIRUS: COMPARISON OF INFECTIOUS VIRIONS TO REPLICATION DEFECTIVE PARTICLES (CAPSID PROTEIN VP1)
reference	Agbandje-McKenna et al. J.Virol. 87 5128 2013
source	H-1 PARVOVIRUS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	ssDNA viruses;
sequence family	Parvovirus coat protein VP2;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4g0r_A interface=109,111,145,147,233,236,237,458,459,461, gigvstgtydnqttykflgdgwveitahasrllhlgmppsenycrvtvhnnqttghgtkvkgnmayddthqqiwtpwslvdanawgvwfqpsdwqfiqnsmeslnldsLsQelfnvvvktvteqqgagaikvynndltacmmvaLdSnnilpytpaaqtsetlgfypwkptapapyryyffmprqlsvtssnsaegtqitdtigepqalnsqfftientlpitllrtgdeftTgtYIfntdplklthtwqtnrhlgmppritdlptsdtatasltangdrfgstqtqnvnyvtealrtrpaqigfmqphdnfeanrggpfkvpvvplditagedhdangairfnygkqhgedwakqgaaperytwdaidsaagrdtarcfvqsapisippnqnqilqredaiagrtnmhytnvfnsygplsafphpdpiypngqiwdkeldlehkprlhvtapfvckNNpPgqlfvrlgpnltdqfdpnsttvsrivtystfywkgilkfkaklrpnltwnpvyqattdsvansymnvkkwlpsatgnmhsdplicrpvphmty