interface graph thumbnail
legend  pdf

structure nameY-FAMILY DNA POLYMERASE CHIMERA DBH-DPO4-DPO4 #1
referenceWilson et al. Structure 21 20 2013
experimentX-ray (resolution=1.90, R-factor=0.187)
structural superfamilyDNA/RNA polymerases;Lesion bypass DNA polymerase Y-family, little finger domain;
sequence familyimpB/mucB/samB family;
redundant complexes4f4x_A 4f50_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  ----VG----AGAG------PC------MG----------------IC------HA--LCST----RGRG                                         +4f4w_A    
                                                                                                               +-1 
  ----VG----AG--------PCIAKAQA------------KC----YC----------LCST----RC--                                     +-2 +4f4y_B    
                                                                                                             ! ! 
  ----------AC----AG------------------------ST--YG----RG----LC------RCKT                                   +-4 +4f4z_A    
                                                                                                           ! ! 
  ----------VASA----AAPT--MT--------------------EG----RT----FT----RT----                                 +-6 +5yuy_A    
                                                                                                         ! ! 
  ----------MASA----AAPC--IC--------------------EG------------TG------RG                             +---7 +-2oh2_B    
                                                                                                     !   ! 
  FCYC----------TTAT------------SCICDCEC----ST----------------SG----RCRT                             !   ! +-4tqr_A    
                                                                                                 +---8   +-5 
  ----------EG--------FG------------------------ETYG------HG------------                         !   !     +-3gqc_A    
                                                                                          +------9   ! 
  ----------MA--------PAFAIA--------------------EC----------FTTG--------                  !      !   +------7nv0_A    
                                                                                  +------10      ! 
  ----QTWA----IT------------------------------ST----TA----------RC------          !       !      +----------7m7n_A    
                                                                                  !       !  
  --------ST----------WG------------------------DTWC------MG------------       +-11       +-----------------6x6z_A    
                                                                               !  !  
  --------------------------------------RT------------------------------       !  !                         +3n4m_B    
                                                                             -12  +-------------------------3 
  --------------------------------------RA------------------------------       !                            +6b6h_I    
                                                                               !  
  --------------------------------------RG------------------------------       +--------------------------5tw1_T    
                                                                             

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updated Tue Dec 19 08:44:40 2023