interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA)
referenceMantovani et al. 'Cell(Cambridge,Mass.)' 152 132 2013
sourceHOMO SAPIENS
experimentX-ray (resolution=3.08, R-factor=0.194)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4;
multimeric complexes4awl_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --------RA                                             +6t7a_C    
                           +-----------------------------1 
  --------RT             +-4                             +7lyb_G    
                         ! ! 
  --------RT           +-5 +-----------------------------1u35_G    
                       ! ! 
  RT--------         +-6 +-----------------------------7v9c_H    
                     ! ! 
  --------RT       +-7 +-----------------------------7lya_E    
                   ! ! 
  --------RT       ! +-----------------------------7wlr_E    
                 --8 
  ----IT--RA       !                            +7k78_E    
                   !          +-----------------2 
  --------RT       +----------3                 +7zs9_e    
                              ! 
  --RAETRT--                  +------------------4ne1_p    
                 

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updated Tue Dec 19 08:36:51 2023