| structure name | CRYSTAL STRUCTURE OF THE DNA BINDING ETS DOMAIN OF THE HUMAN PROTEIN FEV IN COMPLEX WITH DNA (PROTEIN FEV) |
| reference | Burgess-Brown et al. J.Biol.Chem. 290 13692 2015 |
| source | HOMO SAPIENS |
| experiment | X-ray (resolution=2.00, R-factor=0.212) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Etsdomain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SDKRRY |
Estimated binding specificities ?
| readout + contact |  |
A | 8 16 13 1 0 21 C | 31 20 9 90 95 4 G | 14 28 14 3 1 66 T | 43 32 60 2 0 5scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: ETS CRYSTAL STRUCTURE OF THE DNA BINDING ETS DOMAIN OF THE HUMAN PROTEIN FEV IN COMPLEX WITH DNA mining | ||
| ACGGAAGT | PubMed | 3zp5_A(7.29e-03) |
| ACTTCCG | PubMed | 3zp5_A(3.91e-03) |
| CCGGAA | PubMed | 3zp5_A(1.33e-03) |
| CCGGAAGT | PubMed | 3zp5_A(7.29e-03) |
| CGGAA | PubMed | 3zp5_A(4.30e-04) |
| GCCGGAA | PubMed | 3zp5_A(3.91e-03) |
| GCGGAA | PubMed | 3zp5_A(1.33e-03) |
| GGCGGAAGT | PubMed | 3zp5_A(1.16e-02) |
Dendrogram of similar interfaces ?
matrix format--------------KT--RG--RGYA------ L +--------------3wts_C +-------2 ----RC-------------------------- +-3 +--------------7cow_T ! ! ------------------TT--CT--NGKG-- L +-4 +----------------------7oot_B ! ! NC----------------TT--CT--NGKG-- L +--5 +------------------------7rh2_B ! ! --------------------NTCT--NGST-- L +-6 +--------------------------1if1_B ! ! ------LTNTHG--RTYTPT------------ L ! ! +------------6qil_A --7 +----------------1 --------NT--TCTA--------------RT L ! +------------5zux_A ! --RC---------------------------- +-----------------------------6l9z_S |
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updated Tue Dec 19 08:33:31 2023