3x1l_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE CRISPR-CAS RNA SILENCING CMR COMPLEX BOUND TO A TARGET ANALOG (CMR4)
reference	Numata et al. Mol.Cell 58 418 2015
source	ARCHAEOGLOBUS FULGIDUS DSM 4304
experiment	X-ray (resolution=2.10, R-factor=0.210)
sequence family	RAMP superfamily;
multimeric complexes	3x1l_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3x1l_D interface=31,32,116,252,260,265,266, mfdmfekavvfglysitpvhagsgaelsviDLpiqrerhtgfpviwgqslkgvlrsrfrqleldekieveqkwkwkektkevlkekadefikkveerkrdpllteivfgpatdgaSehagavsvgdakillfpvrsakgvfafvtspiviqrlkedfelvseiendielkkvelsnnetiagnalilngenkviledivlkvksvienlvevlktlfgdnffgkikeriaivsddvfksftrfsteivarvRidaekgtVarggLWyeeflpsdtlmysliavgspkklpkevdntqkivnvlkvtfnnaflqiggdetvgkgfvkvragv
interface signature	DLSRVLW

Estimated binding specificities ?

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# IC=3.162 IC/col=0.263 n_of_columns=12

specificity:

A |   0  24   0  14  24  24  24  24  24  24  24  60
C |  96  24   0  52  24  24  24  24  24  24  24  12
G |   0  24  96  14  24  24  24  24  24  24  24  12
T |   0  24   0  16  24  24  24  24  24  24  24  12

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updated Tue Dec 19 08:29:22 2023