interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE NUCLEOSOME CONTAINING HUMAN TSH2B
(HISTONE H2B TYPE 1-A)
referenceKurumizaka et al. 'Acta 70 444 2014
sourceHOMO SAPIENS
experimentX-ray (resolution=2.80, R-factor=0.244)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3wkj_ABCDEFGH 5gsu_ABCDEFGH 5gt3_ABCDEFGH
redundant complexes5gsu 5gt3
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG----                                             +7k6p_D    
                          +--------------------------2 
  RG----                  !                          +3x1t_H    
                        +-9 
  --LTRC                ! !      +-------------------6jm9_A    
                        ! !      ! 
  ----RT                ! +------8                   +8cww_A    
                        !        !    +--------------1 
  ----RT                !        +----5              +8g57_E    
                        !             ! 
  ----RG             +-10             +--------------7yqk_E    
                     !  !  
  ----RT             !  !                          +--1u35_G    
                     !  !            +-------------3 
  ----RG             !  !          +-6             +--7uv9_E    
                     !  !          ! ! 
  --LC--          +-11  +----------7 +----------------8bvw_e    
                  !  !             ! 
  ----RT          !  !             !           +----7lyb_G    
                  !  !             +-----------4 
  --LTRC       +-12  !                         +----3kwq_E    
               !  !  !  
  ----RA       !  !  +-----------------------------1kx5_G    
             -13  !  
  ----RT       !  +-----------------------------7zs9_e    
               !  
  --LCRT       +-----------------------------8byq_e    
             

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updated Tue Dec 19 08:25:17 2023