interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF VIRB CORE DOMAIN (SE-MET DERIVATIVE) COMPLEXED WITH THE CIS-ACTING SITE (5-BRU MODIFICATIONS) UPSTREAM ICSB PROMOTER
(Virulence regulon transcriptional activator virB)
referenceWaltersperger et al. 'Nucleic 41 10529 2013
sourceShigella flexneri 2a
experimentX-ray (resolution=2.42, R-factor=0.237)
structural superfamilyKorB DNA-binding domain-like;
redundant complexes3w2a_A 3w3c_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRATRF

Estimated binding specificities ?

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# IC=3.968 IC/col=0.794 n_of_columns=5 specificity:   
A |   9  11  11   0  96
C |   9   9   9  96   0
G |  11   9   9   0   0
T |  67  67  67   0   0
scan!

Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 08:22:54 2023