interface graph thumbnail
legend  pdf

structure nameX-RAY CRYSTAL STRUCTURE OF WILD TYPE HRTR IN THE APO FORM WITH THE TARGET DNA.
(Transcriptional regulator)
referenceSugimoto et al. J.Biol.Chem. 287 30755 2012
sourceLactococcus lactis
experimentX-ray (resolution=2.00, R-factor=0.204)
structural superfamilyHomeodomain-like;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  --------------YCFA------------   L                         +-------4pxi_B    
                                               +-------------2 
  ------TTRG----YTWA------------   L           !             +-------7jnp_A    
                                           +---4 
  --VT--AGDT--TTYTLA------------   L       !   !                    +5gpc_B    
                                           !   !   +----------------1 
  --LC--RTPTPTSTYT--------------   L   +---5   +---3                +6nsn_B    
                                       !   !       ! 
  --MTRGTGPT--ATYTWT------------   L   !   !       +-----------------5yej_B    
                                     --6   ! 
  RG----HCRGRGQAQG--KG----------   L   !   +-------------------------2glo_A    
                                       ! 
  --------------------STVCKGDCRG   L   +-----------------------------1w0t_A    
                                     

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updated Tue Dec 19 08:21:46 2023