3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure namePLASMODIUM FALCIPARUM SSB COMPLEX WITH SSDNA
(Single-strand binding protein)
referenceLohman et al. J.Mol.Biol. 420 269 2012
sourcePlasmodium falciparum
experimentX-ray (resolution=2.10, R-factor=0.221)
structural superfamilyNucleic acid-binding proteins;
sequence familySinglestrand binding protein family;
multimeric complexes3ulp_ABD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  NTET------RT--CTKTLTNT--VTTTSTATNTETWT----KTTTDTWTRTVTYT----YTRT----HT--RTKTWT--QTITETITST----------   L                            +--3ulp_D    
                                                                                                                                    +-1 
  ----RT--KTNT----------------TTAT------------TT--WTRT----RTITYT--ET------RT------YTTT------NTNTMTQTLT   L                        +-2 +--6irq_A    
                                                                                                                                  ! ! 
  ----RT----NT--DT------------STATNT------QT--TT--WT--------------------------------------------------   L           +------------3 +----5odn_B    
                                                                                                                     !            ! 
  ----------RTTTKT------------TTAT------FTAT--FT--NT--------------------------------------------------   L   +-------4            +----6bhx_B    
                                                                                                             !       ! 
  ------------------------------------------------------------------------------LT--------------------     --5       +-----------------6raw_4    
                                                                                                             ! 
  ------NT--------RT----MTVTET----------------------RTSTLT----------TTETYTRT--------------------------   L   +-------------------------3udg_C    
                                                                                                           

home
updated Tue Dec 19 08:18:19 2023