3ugm_A : 3D-footprint complex

structure name	STRUCTURE OF TAL EFFECTOR PTHXO1 BOUND TO ITS DNA TARGET (TAL effector AvrBs3PthA)
reference	Bogdanove et al. Science 335 716 2012
source	Xanthomonas oryzae
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Thiolase-like;
sequence family	Xanthomonas avirulence protein, Avr/PthA;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ugm_A interface=48,82,115,149,183,251,352,386,420,522,556,618,686,720,752, kpkvrelvahivalsqhpaalgtvavtyqhiitalathedivgvgkqWsgaralealltdagelrgpplqldtgqlvkiakRggvtameavhasrnaltplnltpaqvvaiasnNggkqaletvqrllpvlcqahgltpaqvvaiashDggkqaletmqrllpvlcqahglppdqvvaiasnIggkqaletvqrllpvlcqahgltpdqvvaiashgggkqaletvqrllpvlcqahgltpdqvvaiashDggkqaletvqrllpvlcqahgltpdqvvaiasngggkqaletvqrllpvlcqahgltpdqvvaiasnggkqaletvqrllpvlcqahgltpdqvvaiashDggkqaletvqrllpvlcqthgltpaqvvaiashDggkqaletvqqllpvlcqahgltpdqvvaiasnIggkqalatvqrllpvlcqahgltpdqvvaiasngggkqaletvqrllpvlcqahgltpdqvvaiasngggkqaletvqrllpvlcqahgltqvqvvaiasnIggkqaletvqrllpvlcqahgltpaqvvaiashDggkqaletvqrllpvlcqahgltpdqvvaiasngggkqaletvqrllpgltqeqvvaiasnNggkqaletvqrllpvlcqahgltpdqvvaiasngggkqaletvqrllpvlcqahgltpaqvvaiasnIggkqaletvqrllpvlcqdhgltlaqvvaiasnIggkqaletvqrllpvlcqgltqdqvvaiasnIggkqaletvqrllpvlcqdhgltpdqvvaiasniggkqaletvqrllpvlcqdhgltldqvvaiasnggkqaletvqrllpvlcqdhgltpdqvvaiasnsg
interface signature	WRNDIDDDIIDNIII

Estimated binding specificities ?

readout + contact

# IC=17.452 IC/col=0.873 n_of_columns=20

specificity:

A |   4  83   0  96   8   0  24  24  24   0   0   0  24   0  83   5   4   0  96   0
C |   4   5  96   0   8   5  24  24  24   0   0   0  24   0   5   4   8  96   0   0
G |   4   4   0   0  72   4  24  24  24  96  96  96  24  96   4   4  75   0   0   0
T |  84   4   0   0   8  87  24  24  24   0   0   0  24   0   4  83   9   0   0  96

scan!

Dendrogram of similar interfaces ?

matrix format

  
  WTRA--NGDCIA----DC----DCDCIC----IADC--NG--IAICIA--   L           +--------3ugm_A    
                                                           +-------2 
  YTDTCTIAIANGTG--NGIAIANGDCIAIATARGSADC--NG----SART   L   !       !   +----4cja_A    
                                                         --3       +---1 
  --RT----DA--IA----ITIAIADCDC--ITIADCDC--DC--DC----   L   !           +----2ypf_A    
                                                           ! 
  ----------DCDCHTDC------IA--DC--DC----------------   L   +----------------4osh_B

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updated Tue Dec 19 08:17:13 2023