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structure nameCRYSTAL STRUCTURE OF THE CHD1 DNA-BINDING DOMAIN IN COMPLEX WITH A DNA DUPLEX
(Chromo domain-containing protein 1)
referenceJenkins et al. J.Biol.Chem. ? ? 2011
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=2.00, R-factor=0.195)
structural superfamilyHomeodomain-like;
redundant complexes5j70_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  --------------------------KART                                       +6g0l_M    
                                          +----------------------------4 
  ----------------------------RC          !                            +6ftx_W    
                                          !  
  ------------IA--QCNAMC--------   L      !                           +-4uus_E    
                                          !       +-------------------9 
  ----------QTVA--QTNA----------   L      !       !                   ! +3a01_F    
                                          !       !                   +-1 
  ------------IA--QCNAYA--RT----   L   +-17       !                     +1nk2_P    
                                       !  !       !  
  --RA------KAIT--QTNAMC--------   L   !  !       !                   +---1ahd_P    
                                       !  !       !       +----------11  
  ------------IA--QTNA----------   L   !  !       !       !           !  +5lux_K    
                                       !  !       !       !           +--5 
  ------------IC--QTNA----------   L   !  !       !       !              +5edn_J    
                                       !  +------16       !  
  RA--RCET----SA--QAKG----------   L   !          !       !             +-5lxu_A    
                                       !          !       !           +-8 
  ------------IA--QTNAMC--------   L   !          !  +---14           ! +-1puf_A    
                                       !          !  !    !  +-------10  
  RT----------VA--QTNA----------   L   !          !  !    !  !        !    +5hod_A    
                                       !          !  !    !  !        !  +-3 
  ------------VA--SGNA----------   L -18          !  !    !  !        +--6 +3cmy_A    
                                       !          !  !    !  !           ! 
  ------------IT--QTNAMG--------   L   !          !  !    +-13           +5zjt_E    
                                       !          !  !       !  
  ------------IT--QCNAACRG------   L   !          +-15       !             +6a8r_A    
                                       !             !       !  +----------7 
  ------------IT--QCNAMC--------   L   !             !       !  !          ! +1b8i_A    
                                       !             !       +-12          +-2 
  RT----------IT--QCNAMC--------   L   !             !          !            +2r5y_A    
                                       !             !          !  
  ------------NT----NA--RG------   L   !             !          +-----------1b8i_B    
                                       !             !  
  ------------IA--QCNAMG--------   L   !             +--------------------1b72_A    
                                       !  
  ----NC--AT----CTRA------------       +-----------------------------1s9k_E    
                                     

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updated Tue Dec 19 08:10:42 2023