3sqi_A : 3D-footprint complex

structure name	DNA BINDING DOMAIN OF NDC10 (KLLA0E03807P)
reference	Harrison et al. Nat.Struct.Mol.Biol. 19 48 2011
source	KLUYVEROMYCES LACTIS
experiment	X-ray (resolution=2.82, R-factor=0.196)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3sqi_A interface=124,233,242, mskldsllkelptrtahlyrsiwhkytewlktmpddlklflsqkyivkyiashddiakdplptcdamiwfsraldienndvlvlqqrlyglvkllefdysnviailqkisinlwnpstdslqsKhfktcqdklkllldfqwkfntnvsfedrttvslkdlqcilddengkcglahsskpnfvlvpnfqspftcpiftmavyyylrfhgvkkyykgdgyqilsqlehipiirgKsldqypreLtlgnwyptifkycqlpytkkhwfqvnqewpqfpdfsesdsentigipdfyiekmnrtklqpcpqvhvhlfptdlppdiqavfdllnsvlvtslpllyrvfpthdifldpslktpqniafltgtlpldiesqehllaqlidktgtvs
interface signature	KKL

Estimated binding specificities ?

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# IC=1.441 IC/col=0.180 n_of_columns=8

specificity:

A |  36   8   8  24  24  24  24  40
C |  12   8   8  24  24  24  24   8
G |   8   8   8  24  24  24  24  36
T |  40  72  72  24  24  24  24  12

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KT------KT----LA------   L                              +3sqi_A    
                                                +---------1 
  KT------KT----LT------       +----------------2         +3t79_A    
                               !                ! 
  ----------RT--ET------     --4                +---------6gys_E    
                               ! 
  ----------TTQAATYGYAKT   L   !      +-------------------5jk0_B    
                               +------3 
  --RAFCKC--------------   L          +-------------------1flo_A

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updated Tue Dec 19 08:08:37 2023