3pvi_B : 3D-footprint complex

structure name	D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSIS (PROTEIN PVUII ENDONUCLEASE)
reference	Horton et al.
source	Proteus vulgaris
experiment	X-ray (resolution=1.59, R-factor=0.205)
structural superfamily	Restriction endonuclease-like;
multimeric complexes	1eyu_AB 1f0o_AB 1pvi_AB 2pvi_AB 3pvi_AB
redundant complexes	1eyu_B 1f0o_B 1pvi_A 2pvi_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3pvi_B interface=32,80,83,139,140,142, shpdlnkllelwphiqeyqdlalkhgindifQgnggkllqvllitgltvlpgregndavdnagqeyelksinidltkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy
interface signature	QSHNNK

Estimated binding specificities ?

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# IC=4.887 IC/col=0.977 n_of_columns=5

specificity:

A |   0   0   0   0  38
C |  96   0   0   0  20
G |   0   0  96  76  19
T |   0  96   0  20  19

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Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: PVUII
CAGCTG	PubMed	1eyu_AB(6.70e-08), 1f0o_AB(3.65e-09), 1pvi_AB(1.18e-08), ... (total=8)
CATCTG	PubMed	1eyu_AB(1.04e-03), 1f0o_AB(1.66e-04), 1pvi_AB(3.29e-04), ... (total=5)
CAGATG	PubMed	1eyu_AB(1.04e-03), 1f0o_AB(1.66e-04), 1pvi_AB(3.29e-04), ... (total=5)
CANNTG	PubMed	1f0o_AB(6.34e-03), 1pvi_AB(1.02e-02), 2pvi_AB(1.02e-02), ... (total=4)
CAGCTC	PubMed	1eyu_AB(1.43e-04), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=8)
CCGCTG	PubMed	1eyu_AB(7.49e-04), 1f0o_AB(1.66e-04), 1pvi_AB(3.29e-04), ... (total=8)
TGACCAGCTGGTC	PubMed	3pvi_B(8.69e-03), 1eyu_AB(2.10e-10), 1f0o_AB(6.43e-05), ... (total=9)
CAGNTG	PubMed	1eyu_AB(1.42e-04), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=5)
CAGCTA	PubMed	1eyu_AB(1.43e-04), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=8)
TAGCTG	PubMed	1eyu_AB(1.43e-04), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=8)
CNGCTG	PubMed	1eyu_AB(1.76e-05), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=8)
CAGCTT	PubMed	1eyu_AB(1.43e-04), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=8)
AAGCTG	PubMed	1eyu_AB(1.43e-04), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=8)
CAGCTGGAGC	PubMed	3pvi_B(5.99e-06), 1eyu_AB(9.49e-08), 1f0o_AB(1.24e-05), ... (total=9)
CAGGTG	PubMed	1eyu_AB(8.30e-04), 1f0o_AB(1.66e-04), 1pvi_AB(3.29e-04), ... (total=6)
CAGCCG	PubMed	1eyu_AB(5.31e-07), 1f0o_AB(1.66e-04), 1pvi_AB(3.29e-04), ... (total=8)
GAGCTG	PubMed	1eyu_AB(1.43e-04), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=8)
CAGCGG	PubMed	1eyu_AB(7.49e-04), 1f0o_AB(1.66e-04), 1pvi_AB(3.29e-04), ... (total=8)
CANCTG	PubMed	1eyu_AB(1.42e-04), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=5)
CAGCNG	PubMed	1eyu_AB(1.76e-05), 1f0o_AB(1.75e-05), 1pvi_AB(3.89e-05), ... (total=8)
CGGGAA	PubMed	3pvi_B(2.38e-03)
CTGTAG	PubMed	3pvi_B(1.75e-03)
CTGTAA	PubMed	3pvi_B(1.75e-03)
site	source	matches (E-value)

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updated Tue Dec 19 08:01:44 2023