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structure nameCRYSTAL STRUCTURE OF HUMAN DNMT1(646-1600) IN COMPLEX WITH DNA
(DNA cytosine-5-methyltransferase 1)
referencePatel et al. Science 331 1036 2011
sourceHomo sapiens
experimentX-ray (resolution=3.60, R-factor=0.257)
structural superfamilyS-adenosyl-L-methionine-dependent methyltransferases;
sequence familyBAH domain; C5 cytosinespecific DNA methylase; CXXC zinc finger domain;
reference complex6x9j_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  ------SGKGQC----------------------------------------------------------------------                                 +------------3pta_A    
                                                                                                       +-------------4 
  ----------------------------------------FGNG--------------HGNA------EGMC--KGQG----   L               !             !            +4da4_B    
                                                                                                     +-7             +------------1 
  ----------------------------NT--------VT--------------------------------------LG--                 ! !                          +6pa7_K    
                                                                                                     ! ! 
  --------------------------------------------------------SG------------------------                 ! +--------------------------3ubt_A    
                                                                                                     ! 
  ------------------------------------IT--------------------------ECRG----AT--------               +-8                      +----5ciy_A    
                                                                                                   ! !              +-------2 
  --------------------------------------------------------------EG----SCAGNG--------   L           ! !  +-----------3       +----4dkj_A    
                                                                                                   ! !  !           ! 
  --------------------------CC----NGPG------------ECNCVCRC------------------------RC             +-9 +--6           +------------6kdb_D    
                                                                                                 ! !    ! 
  ------------------------------------IA--------------------------------------------   L         ! !    +------------------------6w8b_A    
                                                                                              +-10 ! 
  --------------FTDTITVT--AT----KA------------LGIT----------------------------------   L      !  ! +----------------------------3zh2_C    
                                                                                              !  !  
  ----------------------NA--YA------------------------------------------------------   L   +-11  !         +-------------------2ih2_D    
                                                                                           !  !  +---------5 
  ----------------------NA--FA------------------------------------------------------       !  !            +-------------------2y7h_B    
                                                                                         -12  !  
  RCNTICKGKGQGKT--------------------------------------------------------------------   L   !  +-----------------------------2kkf_A    
                                                                                           !  
  ------KTKGQC----------------------------------------------------------------------   L   +-----------------------------4nw3_A    
                                                                                         

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updated Mon Dec 18 08:45:10 2023