structure name | STRUCTURE OF OKRAI/DNA COMPLEX (OkrAI endonuclease) |
reference | Aggarwal et al. 'Nucleic 39 712 2011 |
source | Oceanobacter kriegii |
experiment | X-ray (resolution=2.30, R-factor=0.159) |
structural superfamily | Restriction endonuclease-like; |
sequence family | Restriction endonuclease BamHI; |
multimeric complexes | 3odh_AB 3odh_EF |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RNSRRYTDR |
Estimated binding specificities ?
readout + contact |
A | 0 0 0 96 24 17 45 24 1 78 C | 0 0 0 0 24 63 8 24 8 0 G | 0 96 96 0 24 8 17 24 0 17 T | 96 0 0 0 24 8 26 24 87 1scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: OKRAI | ||
TATGGATCCATA | PubMed | 3odh_F(9.57e-09), 3odh_AB(6.26e-08) |
Dendrogram of similar interfaces ?
matrix format--RT------NG------RGRTYTTTDCRG L +------------------3odh_F +-----1 ----RC----------RT------------ L ! +------------------4dav_B --3 AA----RAKGRGECRG-------------- L ! +--------------------3bm3_A +---2 ------------AAEARG------------ L +--------------------5dwa_A |
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updated Tue Dec 19 07:57:10 2023