| structure name | CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF FOXO4 BOUND TO DNA (Forkhead box protein O4) |
| reference | Obsilova et al. 'Acta 66 1351 2010 |
| source | Homo sapiens |
| experiment | X-ray (resolution=1.87, R-factor=0.195) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Fork head domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SNSRHS |
Estimated binding specificities ?
| readout + contact |  |
A | 6 6 6 0 6 78 C | 6 6 6 0 6 6 G | 6 78 6 0 6 6 T | 78 6 78 96 78 6scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: FOXO4 | ||
| TTGTTTAC | PubMed | 3l2c_A(1.35e-11) |
Dendrogram of similar interfaces ?
matrix format------------------NAST--RTHT----ST---------- +-----------------------------3co7_C +-1 ------------------NAST--RGHT----STLT-------- L +-2 +-----------------------------7cby_C ! ! ------------------NAST--RGHTNT--STLT-------- L +-3 +-----------------------------7fj2_B ! ! ----------------NAST--RGHTNT--STLA---------- L +-4 +-----------------------------2hdc_A ! ! ----RC-------------------------------------- +-5 +-----------------------------7cow_T ! ! ------------KGTA----TA------RG-------------- L +-6 +-----------------------------1xsd_A ! ! ------LTNTHG--RT--YTPT---------------------- L +-7 +-----------------------------6qil_A ! ! KAFA--------------------------------YANAFGMC --8 +-----------------------------3aaf_B ! --------------------NT--RGCT----NGST-------- L +-----------------------------1if1_B |
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updated Tue Dec 19 07:47:34 2023