interface graph thumbnail
legend  pdf

structure nameCORE MODEL OF THE MOUSE MAMMARY TUMOR VIRUS INTASOME
(INTEGRASE)
sourceMOUSE MAMMARY TUMOR VIRUS
experimentNMR
structural superfamilyRibonuclease H-like;DNA-binding domain of retroviral integrase;N-terminal Zn binding domain of HIV integrase;
sequence familyIntegrase core domain; Integrase DNA binding domain; Integrase Zinc binding domain;
multimeric complexes7ut1_ABG 7ut1_CE
redundant complexes7usf_D 7ut1_d
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQARQR

Estimated binding specificities ?

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# IC=5.166 IC/col=0.861 n_of_columns=6 specificity:   
A |   8   0   8   8   0   0
C |  11   0  72   8   0  87
G |   8  96   8  69  96   1
T |  69   0   8  11   0   8
scan!

Dendrogram of similar interfaces ?

matrix format
  
  VT--PT----------PAQAAGEARCQG--------RG--------   L                             +--3jca_E    
                                                                +----------------1 
  --NT------WA--TA--QGAGECRTRC--ET----RGYT------   L        +---3                +--7jn3_E    
                                                            !   ! 
  HG----DT----------QG--ECSGHCQT----------------         +--4   +-------------------6rwm_A    
                                                         !  ! 
  HG--QT--DT--------QG--ECSCKG------------------         !  !                   +---6vdk_A    
                                                       +-5  +-------------------2 
  ------------QT--PAQGAGECRGQG------------------   L   ! !                      +---7u32_A    
                                                     --6 ! 
  ------------------------------------RAYACAPAWA       ! +--------------------------3jca_H    
                                                       ! 
  --------------------------------LAWAETACVAIA--       +---------------------------6puy_D    
                                                     

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updated Tue Dec 19 07:40:22 2023