| structure name | CRYSTAL STRUCTURE OF A Z-Z JUNCTION (WITH HEPES INTERCALATING) (Double-stranded RNA-specific adenosine deaminase) |
| reference | Athanasiadis et al. Proc.Natl.Acad.Sci.USA 107 9088 2010 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.65, R-factor=0.229) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Adenosine deaminase zalpha domain; |
| multimeric complexes | 2acj_BCD 3f23_AB 3irq_AD 3irr_AB 3irr_CD 5zu1_BC 5zuo_BCD 5zup_BCD |
| redundant complexes | 5zuo 5zup 5zu1 3irq |
| reference complex | 1qbj_C |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format----------ST--STQAQGST--SART--------------------KT-------- L +-----------------------5trd_B ! --------------TT--PTTC--STNT--------------------RT-------- L ! +4lln_I ! +----2 --------------DCSA--TA--TT--------RT------------RA-------- L ! +---7 +1z9c_A ! ! ! ----------------RGSTRT--STHG--------------------RA-------- L ! +-11 +-----3zpl_B ! ! ! ----------TT------KATT--QTTG----LTRT----KA----------FTYT-- L ! ! ! +----2p7c_B ! ! +----6 ----------------SANCTG--TTPT--------------------RT-------- L +--15 ! +----5hlg_E ! ! +-12 --------------STKTPTTT--FT----------------------RA-------- L ! ! ! ! +--------4aso_F ! ! ! ! +-9 --------------------------------YG------------------------ ! ! ! ! ! ! +4lb5_B ! ! +------13 +-10 +-------1 --------------STPTATAT--TTKG------------------------------ L ! ! ! ! ! +5yi2_J ! ! ! ! ! --------------QTPTPG--TTRG----------------------HT-------- L ! ! ! ! +---------5xxp_A ! ! ! ! ------------------KGTA----TA------RG---------------------- L +-16 +-14 +--------------1xsd_A ! ! ! --------------------------------HT--ST-------------------- L ! ! ! +--6akp_C ! ! ! +-----5 --------------------------NA----HT--STLT------------------ L ! ! ! ! ! +2a07_K ! ! +-------------8 +-4 ------------------------NAST--RGHT--ST-------------------- L ! ! ! +6nce_A +-17 ! ! ------KAFA--------------------------------YANAKTFGMC------ ! ! ! +--------3aaf_B ! ! ! ------------RGSTRGMCTT--RT-------------------------------- L ! ! ! +4u0y_B +-18 ! +--------------------------3 --------------TTLTECTA--STRG------------------------------ L ! ! ! +4i2o_B ! ! ! ------------------HT----RTITYT---------------------------- L -19 ! +----------------------------4kfc_B ! ! LAHAKARA----------------------------------------------IAVA ! +----------------------------6dta_A ! ------------------NTVC--ECSTYT--STYC--------RA------------ L +----------------------------5ed4_A |
home
updated Mon Dec 18 08:08:18 2023