3a5u_B : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	PROMISCUITY AND SPECIFICITY IN DNA BINDING TO SSB: INSIGHTS FROM THE STRUCTURE OF THE MYCOBACTERIUM SMEGMATIS SSB-SSDNA COMPLEX (Single-stranded DNA-binding protein)
reference	Manjunath et al.
source	Mycobacterium smegmatis
experiment	X-ray (resolution=2.80, R-factor=0.240)
structural superfamily	Nucleic acid-binding proteins;
sequence family	Singlestrand binding protein family; OBfold nucleic acid binding domain;
multimeric complexes	3a5u_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3a5u_B interface=16,18,19,20,26,27,38,49,51,56,60,64,68,80,81,91,92,104, magdttitvvgnltaDpELRftpsgAAvanftvastpRmgewkdgealFlRcniwReaaEnvaEsltRgsrvivtgrlkQRsfetrekrtVVevevdeigpslRyatakvnk

  
  --NT--------RTMTVTET--------------------RTSTLT--------TTETYTRTQT--KT       +-----------------------------3udg_C    
                                                                           --3 
  RT----NT--DT--------ST--AT--NT----QTTTWT----------------------------   L   !                        +----5odn_B    
                                                                             +------------------------2 
  ------RTTTKT----------TT--AT--NTTTFTATFTNT--------------------------   L                            ! +--6bhx_B    
                                                                                                      +-1 
  RT--KTNT------------TT--AT----------TTWTRT----RTITYTET------RT--WT--   L                              +--6irq_A

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updated Tue Dec 19 07:08:41 2023