interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF MAFG-DNA COMPLEX
(Transcription factor MafG)
referenceMotohashi et al. Mol.Cell.Biol. 29 6232 2009
sourceMus musculus
experimentX-ray (resolution=2.80, R-factor=?)
structural superfamilyA DNA-binding domain in eukaryotic transcription factors;
sequence familybZIP Maf transcription factor;
multimeric complexes3a5t_AB 7x5e_AB 7x5e_EF 7x5f_AB 7x5f_EF 7x5g_AB 7x5g_EF
reference complex7x5e_E
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRNYACR

Estimated binding specificities ?

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# IC=2.963 IC/col=0.370 n_of_columns=8 specificity:   
A |  10   0   4  16  22  30  20  19
C |  10   0  88  14  22  22  34  20
G |  13  96   2  14  27  22  20  19
T |  63   0   2  52  25  22  22  38
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: MAFG
TGCTGAGTCATPubMed3a5t_AB(1.67e-05)

Dendrogram of similar interfaces ?

matrix format
  
  --------RG------NC----YGATCTRG   L               +-------2wt7_B    
                                            +------2 
  ----RA--NA----AAVT----STRG----   L        !      +-------1h89_A    
                                       +----3 
  ----------------NC----AAAT--RT   L   !    !              +1a02_F    
                                     --4    +--------------1 
  --RA--NT--AAVT----STRG--------   L   !                   +1hjb_A    
                                       ! 
  QG----QC--FTRC----------------   L   +-------------------7aw7_D    
                                     

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updated Mon Dec 18 07:24:55 2023