| structure name | CRYSTAL STRUCTURE OF ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA (HOMEODOMAIN-CONTAINING PROTEIN) |
| reference | Miyazono et al. 'Embo 29 1613 2010 |
| source | DROSOPHILA MELANOGASTER |
| experiment | X-ray (resolution=2.70, R-factor=0.234) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| multimeric complexes | 3a01_AB 3a01_EF |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | HRRTQN |
Estimated binding specificities ?
| contact |  |
A | 0 96 96 0 20 76 C | 96 0 0 0 19 1 G | 0 0 0 0 19 19 T | 0 0 0 96 38 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: clawless | ||
| TAATTAA | PubMed | 3a01_E(7.92e-06), 3a01_AB(5.68e-10) |
Dendrogram of similar interfaces ?
matrix formatRC--RT--ITQCNAACRG-- L +6a8r_A +-------------2 --RCRT--NT--NAITRG-- ! +5zjt_B +-4 ----RT--VAQTNA------ L ! ! +5hod_A +-5 +--------------1 ----RT--IAQCNAYA--RT L ! ! +1nk2_P ! ! --RTRT--IAKGNA------ L +----6 +---------------6m3d_C ! ! ----RTFTYAQTNAATRG-- L ! ! +----6ryd_F +-7 +-----------3 ------RTVAITNAMCRG-- L ! ! +----1yrn_A +---8 ! ----RA--YAQTNAAARG-- L ! ! +---------------------6wig_A +--9 ! ------RCVACTNAQA---- L ! ! +----------------------7xrc_C -10 ! ----RARCVTCTNAQTRC-- L ! +--------------------------1au7_A ! ----RT--VAQTNA------ L +-----------------------------1fjl_B |
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updated Tue Dec 19 07:08:32 2023