interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF SOXR IN COMPLEX WITH DNA
(Redox-sensitive transcriptional activator soxR)
referenceKobayashi et al. Proc.Natl.Acad.Sci.Usa 105 4121 2008
sourceEscherichia coli
experimentX-ray (resolution=2.80, R-factor=0.243)
structural superfamilyPutative DNA-binding domain;
sequence familyMerR, DNA binding; MerR family regulatory protein;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSF

Estimated binding specificities ?

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# IC=1.624 IC/col=0.406 n_of_columns=4 specificity:   
A |  52   0  19  19
C |  14  96  19  20
G |  14   0  20  19
T |  16   0  38  38
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RART------       +------4r24_B    
                   ! 
  KGQGRT----   L   !         +5i44_I    
                 --4       +-1 
  KCRT----YC       ! +-----2 +1r8e_A    
                   ! !     ! 
  RGHTHC--YG   L   +-3     +1r8d_B    
                     ! 
  EARTYARTYG   L     +------6jgx_B    
                 

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updated Tue Dec 19 07:08:18 2023