| structure name | STRUCTURE OF THE SCL:E47:LMO2:LDB1 COMPLEX BOUND TO DNA (T-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1) |
| reference | Hoosdally et al. 'Cell 4 135 2013 |
| source | HOMO SAPIENS |
| experiment | X-ray (resolution=2.80, R-factor=0.226) |
| structural superfamily | HLH, helix-loop-helix DNA-binding domain; |
| sequence family | Helixloophelix DNAbinding domain; |
| multimeric complexes | 2ypa_AB 2ypb_AB |
| redundant complexes |  2ypb_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: LDB1 | ||
| CAGGTG | PubMed | 2ypa_AB(6.64e-03) |
| CANNTG | PubMed | 2ypa_AB(6.64e-03), 2ypb_AB(1.02e-02) |
| CAGCTG | PubMed | 2ypa_AB(6.64e-03) |
| term: LMO2 | ||
| CANNTG | PubMed | 2ypa_AB(6.64e-03), 2ypb_AB(1.02e-02) |
| CAGGTG | PubMed | 2ypa_AB(6.64e-03) |
| CAGATG | PubMed | 2ypa_AB(6.64e-03), 2ypb_AB(3.89e-05) |
| CAGCTG | PubMed | 2ypa_AB(6.64e-03) |
Dendrogram of similar interfaces ?
matrix format--HGNT--ECRCRG L +----------------7d8t_A +------------1 --HGNTMTEARCRG +-2 +----------------1nlw_D ! ! --HG----ETRTRG --3 +-----------------------------5v0l_A ! NG--RG-------- L +-----------------------------6od3_F |
home
updated Tue Dec 19 07:06:52 2023