2xrz_B : 3D-footprint complex

structure name	X-RAY STRUCTURE OF ARCHAEAL CLASS II CPD PHOTOLYASE FROM METHANOSARCINA MAZEI IN COMPLEX WITH INTACT CPD-LESION (DEOXYRIBODIPYRIMIDINE PHOTOLYASE)
reference	Geisselbrecht et al. 'Embo 30 4437 2011
source	METHANOSARCINA MAZEI
experiment	X-ray (resolution=2.20, R-factor=0.171)
structural superfamily	Cryptochrome/photolyase FAD-binding domain;Cryptochrome/photolyase, N-terminal domain;
sequence family	FAD binding domain of DNA photolyase;
redundant complexes	5zcw_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2xrz_B interface=166,401,403,413,422, lvprgshmnpkriralksgkqgdgpvvywmsrdqraednwallfsraiakeanvpvvvvfcltdefleagirqyefmlkglqelevslsrkkipsfflrgdpgekisrfvkdynagtlvtdfsplriknqwiekvisgisipffevdahnvvpcweasqkheyaaHtfrpklyallpefleefpelepnsvtkdplfepwhfepgekaakkvmesfiadrldsygalrndptknmlsnlspylhfgqissqrvvlevekaesnpgskkafldeiliwkeisdnfcyynpgydgfesfpswakeslnahrndvrshiytleefeagkthdplwnasqmellstgkmhgytrmywakkilewsespekaleiaiclndryeldgrdpngyagiawsiggvhdRaWgerevtgkiRymsyegckRkfdvklyiekys
interface signature	HRWRR

Estimated binding specificities ?

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# IC=6.672 IC/col=0.834 n_of_columns=8

specificity:

A |   9   9   0  24   0  96  67   0
C |   9  67   0  24   0   0  11   0
G |  69  11  96  24  96   0   9  96
T |   9   9   0  24   0   0   9   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --HGRTNTET--WT--YTMTWTRCWA--RTRG   L                        +-------2xrz_B    
                                         +--------------------2 
  ----RT----ETWTYT----------PA----       !                    !    +--1tez_B    
                                       --3                    +----1 
  ----------------------------RG--   L   !                         +--2wq7_A    
                                         ! 
  RG------------------------------       +----------------------------4tmu_A

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updated Tue Dec 19 07:05:31 2023