interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE ZINC FINGER DOMAIN OF KLF4 BOUND TO ITS TARGET DNA
(KRUEPPEL-LIKE FACTOR 4)
referenceCarstanjen et al. 'Cell.Mol.Life 68 3121 2011
sourceMUS MUSCULUS
experimentX-ray (resolution=1.70, R-factor=0.202)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
redundant complexes2wbu_A 4m9e_A 5ke6_A 5ke7_A 5ke8_A 5ke9_A 5kea_A 5keb_A 6vtx_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRDERRSDH

Estimated binding specificities ?

readout + contactlogo
# IC=5.766 IC/col=0.961 n_of_columns=6 specificity:   
A |  16   0   0   0   0  13
C |  13  96   0  96  96  13
G |  54   0  96   0   0  16
T |  13   0   0   0   0  54
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: KLF4
CACCCPubMed5ke6_A(4.06e-03), 6vtx_A(1.62e-06), 5ke9_A(1.01e-05)

Dendrogram of similar interfaces ?

matrix format
  
  RGSTYGYC----QCTGSTRGYT--               +-----------------------------4is1_C    
                                       +-2 
  ----HTHGRGTGTTACNA--KGRG   L       +-3 +-----------------------------1tf3_A    
                                     ! ! 
  --DGYCKGRG--QA--TC------   L     +-4 +-----------------------------5k5h_A    
                                   ! ! 
  ----HCHGRG--TAACNA--KGRG   L   +-5 +-----------------------------1tf6_A    
                                 ! ! 
  --CTSTQTLTITSTSTHT--RG--   L --6 +-----------------------------5v3j_F    
                                 ! 
  ----ETTG----YGST--------       !             +---------------6e94_A    
                                 +-------------1 
  --QA--TCRG--RGYCRT------   L                 +---------------7txc_E    
                               

home
updated Tue Dec 19 07:01:16 2023