2vy1_A : 3D-footprint complex

structure name	STRUCTURE OF LEAFY TRANSCRIPTION FACTOR FROM ARABIDOPSIS THALIANA IN COMPLEX WITH DNA FROM AP1 PROMOTER (PROTEIN LEAFY)
reference	Ptchelkine et al. 'Embo 27 2628 2008
source	ARABIDOPSIS THALIANA
experiment	X-ray (resolution=2.10, R-factor=0.226)
structural superfamily	Homeodomain-like;
sequence family	Floricaula / Leafy protein;
redundant complexes	2vy2_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2vy1_A interface=1,55,71,72,75, RehpfivtepgevargkkngldylfhlyeqcrefllqvqtiakdrgekcptkvtNqvfryakksgasyinKPkmRhyvhcyalhcldeeasnalrrafkergenvgswrqacykplvniacrhgwdidavfnahprlsiwyvptklrqlchlernnavaaaaa
interface signature	RNKPR

Estimated binding specificities ?

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# IC=5.300 IC/col=0.589 n_of_columns=9

specificity:

A |   9   0   0   0  24  24  24   9  67
C |   9   0   0   0  24  24  24   9   9
G |  11  96  96   0  24  24  24  11  11
T |  67   0   0  96  24  24  24  67   9

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updated Tue Dec 19 07:00:19 2023