Estimated binding specificities ?

structure nameCRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH LEFT END 26-MER DNA
(TRANSPOSASE ORFA)
referenceRonning et al. 'Cell(Cambridge,Mass.)' 132 208 2008
sourceHELICOBACTER PYLORI
experimentX-ray (resolution=2.10, R-factor=0.225)
structural superfamilyTransposase IS200-like;
sequence familyTransposase IS200 like;
multimeric complexes2a6o_AB 2vhg_AB 2vic_AB 2vih_AB 2vju_AB
redundant complexes2a6o_B 2vhg_A 2vic_A 2vju_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
contactlogo
# IC=7.099 IC/col=0.296 n_of_columns=24 specificity:   
A |  96  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  54   0   0   0  13
C |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13   0   0   0  13
G |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13   0  96  96  54
T |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  16  96   0   0  16
scan!

Dendrogram of similar interfaces ?

matrix format



home

updated Tue Dec 19 06:59:02 2023