interface graph thumbnail
legend  pdf

structure nameHELICASE PRODUCT COMPLEX
(PROTEIN HELICASE PCRA)
referenceDillingham et al. 'Cell(Cambridge,Mass.)' 97 75 1999
sourceGEOBACILLUS STEAROTHERMOPHILUS
experimentX-ray (resolution=2.90, R-factor=?)
structural superfamily?;P-loop containing nucleoside triphosphate hydrolases;
sequence familyUvrD/REP helicase;
multimeric complexes2pjr_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureFTHFDYWRRKY

Estimated binding specificities ?

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# IC=5.938 IC/col=1.188 n_of_columns=5 specificity:   
A |   7   0   0   0   0
C |   7   0   0   0   0
G |   7   0   0   0   0
T |  75  96  96  96  96
scan!

Dendrogram of similar interfaces ?

matrix format
  
  FTTT--HT----------------FTDTYTWTRTRT----KTYT--   L                       +2pjr_A    
                                                                         +-1 
  ------HT----------------FT----WTRTRT----------       +-----------------2 +3pjr_A    
                                                       !                 ! 
  FT----HT------------DT--FT----FTRTRT--AC------       !                 +4c2t_B    
                                                       ! 
  ------HT----------------FT----FTRTRTNTAT----RG     --6                +-4c2u_D    
                                                       !        +-------3 
  FT----HT------------ST--FT----WGRTRT----------       !      +-4       +-2is6_B    
                                                       !      ! ! 
  ------HTDTKTRTATFTLTDTQTFT----WTRTRT----------   L   +------5 +---------1uaa_B    
                                                              ! 
  FG--RTHG----------LT----FT----WTRGRT----------   L          +-----------6ppr_B    
                                                     

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updated Tue Dec 19 06:51:10 2023