2odi_A : 3D-footprint complex

structure name	RESTRICTION ENDONUCLEASE BCNI-COGNATE DNA SUBSTRATE COMPLEX (R.BCNI)
reference	Szczepanowski et al.
source	BREVIBACILLUS CENTROSPORUS
experiment	X-ray (resolution=1.45, R-factor=0.175)
structural superfamily	Restriction endonuclease-like;
multimeric complexes	2odi_AB 2q10_AB 3imb_AC
redundant complexes	2q10_A 3imb_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2odi_A interface=30,32,33,71,72,74,77,111,113,200,202,214,216,219,221, mkiwskeevvnklheiknkgylsvptdmfRtDDgvvgqilerqfgvqennitlgdlgefelkgmrnrkakSNlTlfHkkpvagqtviqifnrfgyvkpssrnpevmkkklFtTikggrlnnlgltlnakhaseinlyyqdeylstwdlnlskieklvlvfaetigranspeeqfhftkaymlteinditslindgvlvmDlCidqdlskskgpHdRgpHlRipiskldklyrnierll
interface signature	RDDSNTHFTDCHRHR

Estimated binding specificities ?

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# IC=9.029 IC/col=0.695 n_of_columns=13

specificity:

A |   0   0   0   0   0  71  78  24  24  24  24   9   6
C |  96  96  96   0   0   6   6  24  24  24  24  68  78
G |   0   0   0  96  96  13   6  24  24  24  24   6   6
T |   0   0   0   0   0   6   6  24  24  24  24  13   6

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Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: BCNI
CCGGG	PubMed	2odi_A(1.83e-05), 2odi_AB(3.84e-05), 2q10_AB(4.41e-05), ... (total=6)
CCCGG	PubMed	2odi_A(1.83e-05), 2odi_AB(3.84e-05), 2q10_AB(4.41e-05), ... (total=6)
CCCGGG	PubMed	2odi_A(2.17e-04), 2odi_AB(5.24e-04), 2q10_AB(5.13e-04), ... (total=6)
CCAGG	PubMed	3imb_B(2.70e-03)
CCTGG	PubMed	3imb_B(2.70e-03)
CCNGG	PubMed	2odi_A(8.54e-03), 3imb_B(3.57e-04), 2q10_B(1.24e-02)

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updated Tue Dec 19 06:47:49 2023