structure name | CRYSTAL STRUCTURE OF PI INITIATOR PROTEIN IN COMPLEX WITH ITERON DNA (PI protein) |
reference | Swan et al. Proc.Natl.Acad.Sci.Usa 103 18481 2006 |
source | Escherichia coli |
experiment | X-ray (resolution=3.10, R-factor=0.227) |
structural superfamily | "Winged helix" DNA-binding domain; |
sequence family | Initiator Replication protein; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | TSLYRYPIRDK |
Estimated binding specificities ?
readout + contact |
A | 0 96 56 82 24 24 24 24 24 4 0 24 4 0 1 C | 0 0 6 6 24 24 24 24 24 4 0 24 84 8 0 G | 96 0 30 4 24 24 24 24 24 32 0 24 8 69 8 T | 0 0 4 4 24 24 24 24 24 56 96 24 0 19 87scan! |
Dendrogram of similar interfaces ?
matrix format----TT--SGLTYART------YT--PCITRGDCKT-- L +-----2nra_C +--------------------1 ------SGAAECSAKGRGRGSTYGRTPGDCRGRG--RC L +-2 +-----7rva_C ! ! QA------------------------------------ --3 +--------------------------7k63_U ! --RC---------------------------------- +---------------------------6l9z_S |
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updated Tue Dec 19 06:43:59 2023