| structure name | LEF1 HMG DOMAIN (FROM MOUSE), COMPLEXED WITH DNA (15BP), NMR, 12 STRUCTURES (PROTEIN LYMPHOID ENHANCER-BINDING FACTOR) |
| source | MUS MUSCULUS |
| experiment | NMR |
| structural superfamily | HMG-box; |
| sequence family | HMG high mobility group box; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KNMMESANYKRKK |
Estimated binding specificities ?
| readout + contact |  |
A | 12 0 15 2 4 82 39 10 C | 60 4 10 20 2 6 17 12 G | 12 2 15 3 87 3 12 65 T | 12 90 56 71 3 5 28 9scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: LEF1 | ||
| GTTTGAT | PubMed | 2lef_A(1.69e-04) |
Dendrogram of similar interfaces ?
matrix formatRTNGFTIA--RA--NASGST--YAPG L +-----------------------1j46_A ! RCNTFTMA--RAHGNT--SA--YA-- L ! +3f27_D +-----4 +-------1 RCNAFTIA--RG--NC--SALTYA-- L ! ! +------------2 +2gzk_A ! ! ! ! RGNTFTMA--RT--NGRTSA--WANT L +-5 +--3 +-------7m5w_A ! ! ! RCNTFTMA--RAHGNAACST------ L ! ! +--------------------4euw_A +-6 ! RCNGFTMA--RTHTNG--ST--YA-- L ! ! +-----------------------------6t90_L --7 ! --STYGLCSGLAKTTGTCIG------ ! +-----------------------------7lbx_A ! KASTYGLASGLA--TGTCIT------ L +-----------------------------3tmm_A |
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updated Tue Dec 19 06:41:47 2023