structure name | STRUCTURE OF VARIOLA TOPOISOMERASE NON-COVALENTLY BOUND TO DNA (DNA topoisomerase 1) |
reference | Van Duyne et al. Mol.Cell 23 343 2006 |
source | Variola virus |
experiment | X-ray (resolution=1.90, R-factor=0.199) |
structural superfamily | DNA breaking-rejoining enzymes;DNA topoisomerase I domain; |
sequence family | Eukaryotic DNA topoisomerase I, catal; Viral DNA topoisomerase I, Nterminal; |
redundant complexes | 2h7f_X 3igc_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RQYYRKKYKDERY |
Estimated binding specificities ?
readout + contact |
A | 67 96 0 0 13 7 21 34 12 74 C | 9 0 0 0 10 74 23 20 60 7 G | 9 0 96 96 63 7 31 22 12 8 T | 11 0 0 0 10 8 21 20 12 7scan! |
Dendrogram of similar interfaces ?
matrix formatHTRA--QAYCYT--RT------KGKGYGKT----ETRGYG L +-----------2h7g_X +---------1 ----MG--YA--KT--------NC----KTDA----TT-- L +-----2 +-----------2b9s_A ! ! ----------------RG--------------RG------ L --3 +---------------------3m4a_A ! ------------------FCKC------KC------NTRG L +---------------------------1flo_A |
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updated Tue Dec 19 06:31:15 2023