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structure nameSTRUCTURE OF FITAB BOUND TO IR36 DNA FRAGMENT
(TRAFFICKING PROTEIN A)
referenceBrennan et al. J.Biol.Chem. 281 37942 2006
sourceNEISSERIA GONORRHOEAE
experimentX-ray (resolution=3.00, R-factor=0.269)
structural superfamilyRibbon-helix-helix;
multimeric complexes2h1o_EFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSVR

Estimated binding specificities ?

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# IC=3.142 IC/col=0.786 n_of_columns=4 specificity:   
A |  57  16   0  96
C |  13  13  96   0
G |  13  13   0   0
T |  13  54   0   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: FITA
TGCTATCAPubMed2h1o_E(1.79e-03), 2h1o_EFGH(1.93e-08)
TGATAGCAPubMed2h1o_E(1.79e-03), 2h1o_EFGH(1.93e-08)
term: FITB
TGCTATCAPubMed2h1o_E(1.79e-03), 2h1o_EFGH(1.93e-08)
TGATAGCAPubMed2h1o_E(1.79e-03), 2h1o_EFGH(1.93e-08)

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updated Thu Dec 22 18:14:30 2022