interface graph thumbnail
legend  pdf

structure nameNARL COMPLEXED TO NARG-89 PROMOTER PALINDROMIC TAIL-TO-TAIL DNA SITE
referenceKaczor-Grzeskowiak et al.
sourceEscherichia coli
experimentX-ray (resolution=2.30, R-factor=?)
structural superfamilyC-terminal effector domain of the bipartite response regulators;
reference complex1je8_F
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSTKVHK/STKVHK

Estimated binding specificities ?

readout + contactlogo
# IC=12.309 IC/col=0.769 n_of_columns=16 specificity:   
A |   0  76  51   0   7   0  17  24  24  63   0  24   0   0   5  96
C |   0  10  38  96  76  96   7  24  24   9   0  24   0   0  29   0
G |   0   9   4   0   6   0   7  24  24  13  96  24  96  96   3   0
T |  96   1   3   0   7   0  65  24  24  11   0  24   0   0  59   0
scan!

home
updated Fri Dec 15 11:30:18 2023