1z9c_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
reference	Fuangthong et al. Mol.Cell 20 131 2005
source	Bacillus subtilis
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1z9c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1z9c_E interface=60,61,63,65,70,87, mklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh > 1z9c_F interface=61,62,64,66,71,88, hmklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh
interface signature	DSTTRR/DSTTRR

Estimated binding specificities ?

readout + contact

# IC=11.253 IC/col=0.563 n_of_columns=20

specificity:

A |   7   0  24  82  94  24   0  24  94  24  13   2  24  34  24   0  24  24  94  84
C |   1   0  24   4   0  24  66  24   0  24  19   0  24   4  24   1  24  24   0   7
G |  10   0  24   5   2  24   0  24   1  24   3   0  24  51  24   5  24  24   1   0
T |  78  96  24   5   0  24  30  24   1  24  61  94  24   7  24  90  24  24   1   5

scan!

home
updated Fri Dec 15 11:29:39 2023