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legend  pdf

structure nameCRYSTAL STRUCTURE OF A LAMBDA INTEGRASE(75-356) DIMER BOUND TO A COC' CORE SITE
(INTEGRASE)
referenceRadman-Livaja et al. Nature 435 1059 2005
sourceENTEROBACTERIA PHAGE LAMBDA
experimentX-ray (resolution=2.80, R-factor=0.218)
structural superfamilyDNA breaking-rejoining enzymes;
sequence familyPhage integrase family; Phage integrase, Nterminal SAMlike;
redundant complexes1p7d_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTNYSASLRKRSTSRY

Estimated binding specificities ?

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# IC=8.695 IC/col=0.966 n_of_columns=9 specificity:   
A |  12   6   0  84   6   0   0   0   6
C |   6   6  96   6   6  96   0   0   6
G |   6   6   0   6  12   0   0   0   6
T |  72  78   0   0  72   0  96  96  78
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: LAMBDA INTEGRASE
CGCTCTTTAPubMed1z19_B(4.31e-03)
GAAGAPubMed1z19_B(3.24e-03)

Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 06:16:19 2023