| structure name | CRYSTAL STRUCTURE OF THE BLAI REPRESSOR IN COMPLEX WITH DNA (penicillinase repressor) |
| reference | Musayev et al. J.Bacteriol. 187 1833 2005 |
| source | Staphylococcus aureus |
| experiment | X-ray (resolution=2.70, R-factor=0.237) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Penicillinase repressor; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KTTR |
Estimated binding specificities ?
| contact |  |
A | 4 0 0 96 12 16 C | 4 0 0 0 12 16 G | 4 96 0 0 60 19 T | 84 0 96 0 12 45scan! |
Dendrogram of similar interfaces ?
matrix format------------KGTA----TA------RG-------------- L +1xsd_A +-----------1 ------------KTTA--RTTALT----RG-------------- L +-----2 +1sax_A ! ! RGRT------------------------------YGKC------ L +--3 +------------6lui_A ! ! ----SGQG--YCNC------------------------------ +-4 +------------------2ve9_C ! ! --------DCLT--AG--TTRG------RG------------RA L +-5 +---------------------5h3r_A ! ! ----YC--KTHGSTQT--YTPT------------------LG-- L +-6 +-----------------------5x11_A ! ! --------------TGQAAT----SARG---------------- L +-7 +------------------------2p5l_D ! ! ------------------NAST--RGHT--ST------------ L +-8 +-------------------------3g73_A ! ! ------------------NAST--RGHTNTSTLT---------- L +-9 +-------------------------7fj2_B ! ! ------------NT----TA----------------RT------ L +-10 +--------------------------5zux_A ! ! ------------DCKT----RG----RGYA-------------- L +-11 +--------------------------1dux_F ! ! --------------------------YG---------------- +-12 +--------------------------2heo_D ! ! ------------------------------------------RT -13 +----------------------------3gfi_A ! ----TC--STKTPTTT--FT------------------RT---- +----------------------------4ass_H |
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updated Tue Dec 19 06:15:01 2023