1u3e_M : 3D-footprint complex

structure name	DNA BINDING AND CLEAVAGE BY THE HNH HOMING ENDONUCLEASE I-HMUI (HNH homing endonuclease)
reference	Landthaler et al. J.Mol.Biol. 342 43 2004
source	Bacillus phage SPO1
experiment	X-ray (resolution=2.92, R-factor=0.220)
structural superfamily	His-Me finger endonucleases;DNA-binding domain of intron-encoded endonucleases;
sequence family	NUMOD4 motif; HNH endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1u3e_M interface=33,35,37,39,41,45,52,54,93,97,100,106,108,111,112,115,119,148,149,151,153,154,160, mewkdikgyeghyqvsntgevysiksgktlkhQiPkDgYhRiglFkggkgkTfQvhrlvaihfcegyeeglvvdhkdgnkdnnlstnlrwvtQkinVenQmsrgtLnVskAQqiAkikNqkpiivispdgiekeypstkcaceelglTRgKvTDvlkghRihhkgytfryklng
interface signature	QPDYRFTQQVQLVAQANTRKTDR

Estimated binding specificities ?

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# IC=21.497 IC/col=0.896 n_of_columns=24

specificity:

A |   2   0   0   0  96  69  24  24  24   0   0   0  74   0  10   8   1   0  72   0   2  24  93  93
C |   3   0   0   0   0   6  24  24  24  91   0   0   8   0  72   8   2   0   6   0   2  24   1   2
G |   2  96  96  96   0  13  24  24  24   3   0  96   6  96   6  74   2   0  10  96  92  24   0   1
T |  89   0   0   0   0   8  24  24  24   2  96   0   8   0   8   6  91  96   8   0   0  24   2   0

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updated Tue Dec 19 06:12:05 2023