interface graph thumbnail
legend  pdf

structure nameBACTERIOPHAGE LAMBDA EXCISIONASE (XIS)-DNA COMPLEX
(EXCISIONASE)
referenceJohnson et al. J.Mol.Biol. 338 229 2004
sourceENTEROBACTERIA PHAGE LAMBDA
experimentX-ray (resolution=1.70, R-factor=0.193)
structural superfamilyPutative DNA-binding domain;
sequence familyExcisionaselike protein;
multimeric complexes1rh6_AB 2og0_AB 6p0u_ABEF
redundant complexes2ief_B 2og0_B 6p0u
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureETRRRR

Estimated binding specificities ?

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# IC=8.062 IC/col=0.733 n_of_columns=11 specificity:   
A |   5  55  66   5  24   6  24   0   0  96   0
C |  80   5  10  75  24   5  24  96   0   0  96
G |   0  30  10   6  24  70  24   0   0   0   0
T |  11   6  10  10  24  15  24   0  96   0   0
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Tue Dec 19 06:05:15 2023