interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX
(PROTEIN DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE ADAR1)
referenceSchwartz et al. Science 284 1841 1999
sourceHomo sapiens
experimentX-ray (resolution=2.10, R-factor=0.227)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyAdenosine deaminase zalpha domain;
multimeric complexes2acj_BCD 3f23_AB 3irq_AD 3irr_AB 3irr_CD 5zu1_BC 5zuo_BCD 5zup_BCD
redundant complexes2acj_C 3f21_A 3f22_A 3f23_B 3irq_D 3irr_C 5zu1_B 5zuo_B 5zup_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  ------------------TTHT----KG------------------RC----   L                                                +-----------------------------7b0c_A    
                                                                                                        +-7 
  --------LT------RTSGTG--QTRG------------------------   L                                            +-8 +-----------------------------2xro_E    
                                                                                                      ! ! 
  ----------SGQG--YCNC--------------------------------                                              +-9 +-----------------------------2ve9_C    
                                                                                                    ! ! 
  ----------------RC------RC--------------------------                                           +-10 +-----------------------------6wfq_C    
                                                                                                 !  !  
  ----------------RCTT----TTHT--LA--------------------   L                                       !  +-----------------------------7e1b_B    
                                                                                                 !  
  --------------------------------YG------------------                                           !                              +2heo_D    
                                                                                                 !              +---------------1 
  ------------------NT----TA----------------------RT--   L                                       !         +----2               +5zux_A    
                                                                                              +-11         !    ! 
  --RGRTKG--------------------------------------YG----   L                                    !  !       +-3    +---------------6lui_A    
                                                                                              !  !       ! ! 
  ----------TC--STKTPTTT--FT------------------------RT                                        !  !     +-4 +--------------------4ass_H    
                                                                                              !  !     ! ! 
  ------------------NTVC--ECSTYT--STYC----------RA----   L                                 +-12  !   +-5 +----------------------5ed4_A    
                                                                                           !  !  !   ! ! 
  KC--------------MGSGTT--TTYC------------------------   L                                 !  !  +---6 +------------------------5f7q_C    
                                                                                           !  !      ! 
  --------------------RG--YC--------------------------   L                              +-13  !      +-------------------------1cf7_B    
                                                                                        !  !  !  
  --------------TT--RGRT----------------------------KT   L                              !  !  +-----------------------------2v1u_A    
                                                                                     +-14  !  
  --------------------------------------------------RT                               !  !  +-----------------------------3gfi_A    
                                                                                  +-15  !  
  ------------------------NAST--RGHTNT--STLT----------   L                        !  !  +-----------------------------7fj2_B    
                                                                               +-16  !  
  ------------------------NAST--RGHT----ST------------   L                     !  !  +-----------------------------3g73_A    
                                                                            +-17  !  
  --------------------------NT------NA------RG--------   L                  !  !  +-----------------------------1b8i_B    
                                                                         +-18  !  
  --------------STRGECTA--NGKG------------------------   L               !  !  +-----------------------------3mzh_A    
                                                                      +-19  !  
  ------------------QT--NAST--RGHTNT--STLA------------   L            !  !  +-----------------------------2hdc_A    
                                                                   +-20  !  
  --------------------------NC----ITNA----RGRG--------   L         !  !  +-----------------------------6fqq_E    
                                                                +-21  !  
  --------------------------NT------NA------ITRG------          !  !  +-----------------------------5zjt_B    
                                                             +-22  !  
  --------------------------NT------NA----IARG--------   L   !  !  +-----------------------------1b72_B    
                                                           -23  !  
  --------------------------IT----QCNA----ACRG--------   L   !  +-----------------------------6a8r_A    
                                                             !  
  ------------------TGQA------SARG--------------------   L   +-----------------------------2p5l_D    
                                                           

home
updated Tue Dec 19 06:02:29 2023